18 Mar 2024
AGC 3.1 (assembled genome compressor) is published.
26 Jan 2024
Paper describing new version of RECKONER, our read corrector is published in Scientific Reports.
22 Jan 2024
Paper describing discoveries made by SPLASH in microbial data is deposited in bioRxiv.
23 Jul 2023
Paper describing archivizer of protein structures is deposited in bioRxiv.org.
15 May 2023
Paper describing improved version of RECONER, our short read corrector in Research Square.
1 Apr 2023
Current state of art in multiple sequence alignment reviewed in Current Opinion in Structural Biology.
17 Mar 2023
Paper describing SPLASH2, ultra-fast unsupervised discovery on raw sequencing reads is deposited in bioRxiv.
2 Mar 2023
Paper describing AGC, our compressor of genome collections is published in Bioinformatics.
23 Dec 2022
AGC 3.0 (major revision) is published.
8 Sep 2022
Paper describing Cuttlefish 2 is published in Genome Biology.
11 Aug 2022
FAMSA 2.1.2 (minor revision) is published.
19 May 2022
FAMSA 2.0.1 with a lot of new features is published.
9 May 2022
AGC 2.1 (bugfix release) is published.
7 Apr 2022
Preprint describing AGC (Assembled Genome Compressor) is available.
5 Apr 2022
AGC 2.0 is published.
28 Mar 2022
Paper desciring our 3rd gen sequencing data compressor is published in Nature Methods.
14 Jan 2022
AGC 1.1 (bugfix release) is published.
4 Jan 2022
KMC 3.2.1 is published.
23 Dec 2021
Initial release of AGC (Assembled Genome Compressor) is published.
23 Dec 2021
KMC 3.2.0 is published.
15 Nov 2021
CoLoRd 1.1 is published.
6 Sep 2021
Initial release of PHIST (Phage-Host Interaction Search Tool) is published.
17 Aug 2021
Kmer-db 1.9.2 is published.
19 Jul 2021
Preprint describing CoLoRd is available.
8 Jul 2021
Initial realease of CoLoRd (compressor of 3rd gen sequencing data) is available for download.
14 Apr 2021
Paper describing Whisper 2 is published in SoftwareX.
31 Mar 2021
Paper describing VCFShark is published in Bioinformatics.
20 Dec 2020
Preprint of the paper describing VCFShark was published in bioRxiv.org.
18 Dec 2020
Version 1.0 of VCFShark is available.
18 Nov 2020
Kmer-db 1.7.6 is published.
21 Jun 2020
FAMSA 1.6.2 is published.
18 Jun 2020
FAMSA 1.6.1 is published.
24 Mar 2020
FAMSA 1.5.12 is published.
21 Feb 2020
FAMSA 1.3.2 is published.
14 Feb 2020
AGC 1.7.5 is published.
24 Jan 2020
Kmer-db 1.7.3 is published.
17 Jan 2020
Paper describing FQSqueezer was published in Scientific Reports.
19 Dec 2019
Version 2.0 of Whisper (our read mapper) is available. The main novelty is significantly improved quality of indel detection. Preprint of a paper describing Whisper 2.0 is available at bioRxiv.org.
24 Jul 2019
Paper describing GTShark (our genotype compressor) was published in Bioinformatics.
28 May 2018
Version 3.1.1 of KMC is available.
28 May 2019
Version 1.6.2 of Kmer-db ia available.
10 May 2018
Version 3.1.0 of KMC is available.
11 Apr 2019
Version 1.5.1 (serious reduction of time and memory) of Kmer-db ia available.
24 Feb 2019
Version 1.0 of FQSqueezer (our experimental FASTQ compressor) is available for download. Paper describing FQSqueezer algorithm can be found in bioRxiv.org.
13 Dec 2018
Preprint of the paper describing GTShark was published in bioRxiv.org.
11 Dec 2018
Version 1.0 of GTShark, out genotypes compressor is available.
8 Nov 2018
Paper describing Whisper was published in Bioinformatics.
13 Jul 2018
Paper describing CoMSA was published in Bioinformatics.
13 Jul 2018
Version 1.1 of Whisper (our mapper) is available.
9 Jul 2018
Paper describing Kmer-db was published in Bioinformatics.
12 Jun 2018
Version 1.1 of Kmer-db, our tool for estimation of evolutionary distances in a collection of genomes is available.
12 Apr 2018
Version 1.1 of CoMSA, our new compressor of multiple sequence alignment files is available.
29 Mar 2018
Paper describing FaStore was published in Bioinformatics.
12 Feb 2018
Paper describing Kmer-db, our tool for estimation of evolutionary distances in a collection of genomes is deposited in bioRxiv.org. Version 1.0 of the software is available.
11 Feb 2018
Paper describing GTC, our genotype data compressor, is published in Bioinformatics.
28 Dec 2017
Preprint of a paper describing Whisper, our new read mapper is available.
28 Dec 2017
Preprint of a paper describing MSAC, our new compressor of multiple sequence alignment files is available.
27 Dec 2017
Source codes of Whisper, our new read mapper are available.
27 Dec 2017
Source codes of MSAC, our new compressor of multiple sequence alignment files are available.
25 Jul 2017
Preprint of a paper describing FaStore, our new compressor of FASTQ files is available.
10 May 2017
Poster describing Whisper was presented at The Biology of Genomes Conference (Cold Spring Harbor, NY)
4 May 2017
Paper describing new version of KMC was published in Bioinformatics.
28 Apr 2017
Version 1.0 (first public release) of GTC, our genotype databases compressor is available.
5 Feb 2017
Version 1.2 of FAMSA, our new multiple sequence aligner is available.
31 Jan 2017
Paper describing QuickProbs 2 was published in Scientific Reports.
29 Jan 2017
Version 3.0 of KMC is available.
5 Jan 2017
Paper describing RECKONER was published in Bioinformatics.
31 Dec 2016
Version 0.2.1 of RECKONER, our read corrector, was released.
27 Sep 2016
Paper describing FAMSA was published in Scientific Reports.
17 Aug 2016
Version 0.2 of RECKONER, our read corrector, was released.
30 Jun 2016
Version 1.1 of FAMSA, our new multiple sequence aligner is available.
3 Mar 2016
Version 1.0 of FAMSA, our new multiple sequence aligner is available. Draft of new paper describing version 1.0 of FAMSA is also available.
23 Dec 2015
Version 2.0 of QuickProbs is available. Draft of new paper describing version 2.0 of QuickProbs is also available.
30 Sep 2015
Version 0.1 of RECKONER is available.
17 Sep 2015
Version 1.2 of PgSA is available.
11 Sep 2015
Version 2.3 of KMC is available.
16 Jul 2015
Paper describing PgSA was published in PLOS ONE.
25 Jun 2015
Paper describing GDC 2, our compression of collections of genomes, was published in Scientific Reports.
7 May 2015
Version 1.1 of PgSA is available.
17 Apr 2015
Paper describing CoMeta, our metagenomic data classifier was published in PLOS ONE.
16 Ar 2015
Version 2.2 of KMC is available.
7 Apr 2015
Version 1.0 of MuGI is available.
5 Mar 2015
Version 2.0 of GDC is available.
13 Feb 2015
Version 1.0 of PgSA is available.
23 Jan 2015
Version 2.1.1 of KMC is available.
20 Jan 2015
Paper describing KMC 2, our k-mer counting program was published in Bioinformatics.
22 Dec 2014
Paper describing ORCOM, our FASTQ files compressor was published in Bioinformatics.
18 Dec 2014
Version 2.1 of KMC is available.
28 Nov 2014
Version 0.3 of CoMeta is available.
26 Nov 2014
Version 1.0 of ORCOM is available.
7 Oct 2014
Paper describing MuGI, our index for collection of genomes was published in PLOS ONE.
14 Sep 2014
Version 0.1 of MuGI is available.
7 Jul 2014
Version 2.0 of KMC is available.
16 May 2014
Paper describing KMC, our k-mer counting program was published in BMC Bioinformatics.
19 Apr 2014
Version 1.02 of QuickProbs is available.
18 Apr 2014
Paper describing DSRC 2, our FASTQ files compressor was published in Bioinformatics.
31 Mar 2014
Version 2.0 RC2 of DSRC is available.
28 Mar 2014
Version 1.0 of KMC is available.
25 Feb 2014
Paper describing QuickProbs, our multiple sequence alignment program was published in PLOS ONE.
2 Dec 2013
Version 2.0 RC of DSRC is available.
21 Aug 2013
Paper describing TGC, our genome compressor was published in Bioinformatics.
5 Jul 2013
Version 1.0 of TGC is available.
29 Nov 2012
Version 0.3 of KMC is available.
23 May 2012
Version 1.02 of DSRC is available.
11 May 2012
Version 1.01 of DSRC is available.
1 May 2012
Version 1.0 of DSRC is available.
26 Jan 2012
Version 0.1 of KMC is available.
5 Sep 2011
Paper describing GDC, our genome compressor was published in Bioinformatics.
11 Aug 2011
Version 0.3 of GDC is available.
16 May 2011
Version 0.2 of GDC is available.
1 Mar 2011
Version 0.1 of GDC is available.
19 Jan 2011
Paper describing DSRC, our FASTQ files compressor was published in Bioinformatics.
18 Dec 2010
Version 0.3 of DSRC is available.
8 Nov 2010
Version 0.2 of DSRC is available.